7/5/2023 0 Comments Cellprofiler pythonSha224 = _get_builtin_constructor('sha224')įile "/home/local/usr/cp2/lib/python2.6/hashlib. It’s a bit tricky right now, because CellProfiler requires Python 3.8 , and CellPose requires Python 3.4-3.7, but if our Python versions ever align, we can certainly see why it would be useful 1 Like DStirling (David Stirling) August 26, 2021, 6:04pm 10 Here we go This should be much simpler going forwards. txt) into an intermediary ome.tiff, containing all the relevant metadata. Sh setuptools-0.6c11-py2.6.egg -prefix="/home/local/usr/cp2"įile "/home/local/Softwares/cellProfiler/CellProfiler/setuptools-0.6c11-py2.6.egg/setuptools/command/easy_install.py", line 21, in įile "/home/local/Softwares/cellProfiler/CellProfiler/setuptools-0.6c11-py2.6.egg/setuptools/package_index.py", line 2, in įile "/home/local/usr/cp2/lib/python2.6/urllib2.py", line 93, in įile "/home/local/usr/cp2/lib/python2.6/hashlib.py", line 138, in An IMC file conversion tool that aims to convert IMC raw data files (.mcd. The probability maps together with the original tiles were loaded into CellProfiler, either using the GUI or running it from the command line. Cell/particle counting, and scoring the percentage of stained objects: CellProfiler is commonly used to count cells or other objects as well as percent-positives, by measuring the per-cell staining intensity. Here's my configuration : Python 2.7.3 (default, Aug 1 2012, 05:16:07)Īnd here is the error I get: make -f Makefile.CP2 PREFIX="$"
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